STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yyaDConserved hypothetical membrane protein YyaD. (337 aa)    
Predicted Functional Partners:
ykyA
Putative transcription factor,conserved hypothetical.
  
     0.641
yuaC
Hypothetical protein; Belongs to the GbsR family.
  
     0.634
BL05397
Conserved hypothetical protein containing domain DUF951.
       0.581
yyaC
Conserved hypothetical protein containing domain DUF1256.
 
    0.574
ylbJ
YlbJ.
  
    0.552
yvbF
Conserved protein YvbF; Belongs to the GbsR family.
  
     0.540
spoIIIAF
SpoIIIAF.
  
    0.536
yrzE
Conserved membrane protein YrzE.
  
     0.535
spoIIIAE
SpoIIIAE.
  
    0.535
spoIIIAG
SpoIIIAG.
  
    0.534
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.