STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydfGConserved hypothetical protein containing Alkylhydroperoxidase AhpD core domain YdfG; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (147 aa)    
Predicted Functional Partners:
BL00106
Putative RNA polymerase, sigma subunit; Belongs to the sigma-70 factor family.
 
    0.892
liaH
Putative phage shock protein YvqH.
      
 0.618
BL01855
Hypothetical protein.
 
     0.577
ybfA
Putative DNA binding protein YbfA.
 
     0.517
yezE
Probable transcriptional regulator (TetR family).
  
     0.474
noc
Putative DNA binding partioning protein; Effects nucleoid occlusion by binding relatively nonspecifically to DNA and preventing the assembly of the division machinery in the vicinity of the nucleoid, especially under conditions that disturb the cell cycle. It helps to coordinate cell division and chromosome segregation by preventing the formation of the Z ring through the nucleoid, which would cause chromosome breakage. Belongs to the ParB family.
       0.467
ydfF
Hypothetical protein.
  
     0.444
spo0J
Stage 0 sporulation protein J; Belongs to the ParB family.
       0.437
soj
Chromosome partitioning protein transcriptional regulator.
       0.437
liaI
Conserved membrane protein LiaI.
      
 0.425
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.