STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybyBConserved hypothetical protein YbyB. (88 aa)    
Predicted Functional Partners:
yflT
Conserved hypothetical protein YflT; General stress protein.
  
    0.729
cotY
Spore coat protein (insoluble fraction).
  
     0.686
cotZ
Spore coat protein (insoluble fraction).
  
     0.679
yjbC
GCN5-related N-acetyltransferase.
  
     0.652
ykyA
Putative transcription factor,conserved hypothetical.
  
     0.616
yyaL
Conserved protein YyaL; Similar to Clostridium sp. thymidylate kinase.
       0.602
yccF
Conserved hypothetical protein.
  
     0.585
BL02112
Hypothetical protein.
  
     0.585
ysoA
Conserved protein YsoA.
  
    0.579
cotX
Spore coat protein (insoluble fraction).
  
     0.542
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.