STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BL00167Putative D-xylose-binding protein. (353 aa)    
Predicted Functional Partners:
BL01748
Sugar ABC transporter (permease); BL01748 similar to rbsC from Bacillus subtilis; Belongs to the binding-protein-dependent transport system permease family.
  
 0.830
BL01747
Sugar ABC transporter (ATP-binding protein); BL01747 similar to rbsA from Bacillus subtilis.
  
 0.815
BL01743
Ribose ABC transporter (ribose-binding protein); BL01743 similar to rbsB from Bacillus subtilis.
 
  
 0.791
rbsC
Ribose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.716
rbsA
Ribose ABC transporter (ATP-binding protein); Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.705
yvaQ
Putative transmembrane receptor taxis protein YvaQ; Chemotaxis sensory transducer.
       0.678
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.413
BL00169
Putative Iron-containing alcohol dehydrogenase.
       0.411
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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