STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yubFConserved protein YubF. (86 aa)    
Predicted Functional Partners:
BL03955
K+ transporter integral membrane subunit.
      
 0.689
ypkP
Conserved hypothetical protein.
  
     0.643
ywqB
YwqB.
  
     0.608
yclG
Pectin lyase-like protein.
  
     0.588
BL05114
Hypothetical protein.
  
     0.588
yqgW
Conserved protein YqgW.
  
     0.564
yceG
Conserved hypothetical protein YceG.
  
     0.556
yngD
Conserved protein YngD.
  
     0.547
tuaE
TuaE.
  
     0.544
ylqG
Conserved hypothetical protein.
  
     0.523
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.