STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvfRABC transporter. (298 aa)    
Predicted Functional Partners:
lanF
Lantibiotic immunity protein,ABC transporter.
  
     0.761
yvfU
CheY-like.
 
   
 0.700
desR
Two-component response regulator responsible for cold induction of the des gene.
 
   
 0.666
desK
Two-component sensor histidine kinase esponsible for cold induction of the des gene.
 
   
 0.659
BL01807
Putative permease.
  
 
 0.537
yfiN
ABC transporter, family 2,ABC transporter, family 2.
 
  
 0.510
yxlG
YxlG.
 
   0.445
ytrE
ABC transporter YtrE.
 
   
0.422
rpsK
Ribosomal protein S11 (BS11); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.408
ycbO
Conserved hypothetical protein YcbO.
  
   0.405
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.