STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxiAGlycoside hydrolase, family 43 YxiA; Belongs to the glycosyl hydrolase 43 family. (475 aa)    
Predicted Functional Partners:
yesX
Polysaccharide lyase Family 11.
  
 
  0.778
yesW
Putative polysaccharide lyase family 11 protein.
  
 
  0.777
celC
Glycoside Hydrolase Family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.775
yvfO
Glyccosyl Hydrolase Family 53; Hydrolyzes the beta-1,4-galactan linkages of arabinogalactan type I, a pectic substance found in plants such as soybeans.
  
  
 0.750
BL00947
Pectate lyase, Polysaccharide Lyase Family 1; Cleaves unsaturated oligo-galacturonides from pectin. The major product is trigalacturonate; digalacturonate and tetragalacturonate are also produced. Activity on methylated pectins decreases with an increasing degree of methylation (By similarity). Belongs to the polysaccharide lyase 1 family.
 
     0.741
yesY
Carbohydrate esterase, Family 12 YesY.
  
  
  0.734
pelB
Pectate lyase, Polysaccharide Lyase Family 1.
 
     0.713
yetA
Conserved hypothetical protein; Molecular Function: carboxypeptidase A activity, Biological Process: proteolysis and peptidolysis.
  
 
  0.713
BL03784
Putative carbohydrate esterase Family 12.
  
  
  0.698
BL00567
Carbohydrate Esterase Family 12, putative beta-tubulin.
  
  
  0.691
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.