STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiQPutative Acyltransferase 3 YfiQ. (362 aa)    
Predicted Functional Partners:
yufK
Hypothetical protein.
  
     0.685
rapG
Response regulator aspartate phosphatase.
  
     0.616
yknT
sigma-E controlled sporulation protein.
  
     0.560
ywzC
YwzC; Belongs to the UPF0741 family.
  
     0.551
ipi
Intracellular proteinase inhibitor Ipi.
  
     0.550
ytrC
Putative permease YtrC.
  
     0.534
ydaN
Putative cellulose synthase.
  
     0.514
rapE
Response regulator aspartate phosphatase.
  
     0.514
cotF
Spore coat protein F.
  
    0.507
rapK
Response regulator aspartate phosphatase.
  
     0.506
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.