STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvfOGlyccosyl Hydrolase Family 53; Hydrolyzes the beta-1,4-galactan linkages of arabinogalactan type I, a pectic substance found in plants such as soybeans. (425 aa)    
Predicted Functional Partners:
lacA
Glycoside Hydrolase Family 42; Hydrolyzes oligosaccharides released by the endo-1,4-beta- galactosidase GalA from arabinogalactan type I, a pectic plant polysaccharide. It is unable to use lactose as a sole carbon source (By similarity). Catalyzes the hydrolysis of lactose to its constituent monosaccharides glucose and galactose. Possesses a low level of transgalactosylation activity for the production of galacto- oligosaccharides (GOS) from lactose; Belongs to the glycosyl hydrolase 42 family.
 
  
 0.914
cycB
Putative extracellular solute-binding protein, family 1 CycB.
 
  
 0.840
yxiA
Glycoside hydrolase, family 43 YxiA; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.750
yesZ
Glycoside hydrolase, family 42; May play a role in the degradation of rhamnogalacturonan derived from plant cell walls.
 
  
 0.686
celC
Glycoside Hydrolase Family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.677
yetA
Conserved hypothetical protein; Molecular Function: carboxypeptidase A activity, Biological Process: proteolysis and peptidolysis.
 
    0.674
ydhT
Glutamine amidotransferase, class-II; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.674
yesU
YesU.
  
     0.669
yvfM
Binding-protein-dependent transport system, inner membrane component protein.
  
  
 0.661
abfA
Glycoside Hydrolase Family 51.
  
 
 0.657
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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