STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cycBPutative extracellular solute-binding protein, family 1 CycB. (422 aa)    
Predicted Functional Partners:
yvfM
Binding-protein-dependent transport system, inner membrane component protein.
 
 0.999
yvfL
Binding-protein-dependent transport systems inner membrane component.
 0.998
mdxG
MdxG - part of ABC transport system for maltodextrins, membrane spanning component.
 
 0.996
msmX
Multiple sugar-binding transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.992
mdxF
Maltodextrin transport system permease protein MdxF.
 0.986
mdxE
MdxE is substrate binding part of the maltodextrin ABC transport system.
  
  
 
0.913
lacA
Glycoside Hydrolase Family 42; Hydrolyzes oligosaccharides released by the endo-1,4-beta- galactosidase GalA from arabinogalactan type I, a pectic plant polysaccharide. It is unable to use lactose as a sole carbon source (By similarity). Catalyzes the hydrolysis of lactose to its constituent monosaccharides glucose and galactose. Possesses a low level of transgalactosylation activity for the production of galacto- oligosaccharides (GOS) from lactose; Belongs to the glycosyl hydrolase 42 family.
 
  
 0.870
yvfO
Glyccosyl Hydrolase Family 53; Hydrolyzes the beta-1,4-galactan linkages of arabinogalactan type I, a pectic substance found in plants such as soybeans.
 
  
 0.867
yvdJ
Conserved membrane protein YvdJ.
 
  
 0.825
lacR
Transcriptional regulator LacR.
 
  
 0.797
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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