STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BL00284ABC transporter. (292 aa)    
Predicted Functional Partners:
BL00283
Putative transcriptional regulator, GntR family.
 
  
 0.953
BL00285
Hypothetical protein.
 
     0.941
BL02724
Conserved hypothetical protein; Putative transcriptional regulator.
 
  
 0.803
ytrA
Transcriptional regulator YtrA.
 
    0.664
BL02722
Hypothetical protein.
 
     0.626
BL01807
Putative permease.
  
   0.502
ytrF
Possible acetoin transport system substrate binding protein YtrF.
  
  
 0.498
BL00282
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.464
BL00274
ABC transporter.
 
    0.435
BL05021
Conserved hypothetical protein.
  
   0.411
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.