ysmB protein (Bacillus licheniformis) - STRING interaction network

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Score

ysmB

Probable transcriptional regulator YsmB. (147 aa)

Predicted Functional Partners:

racE

0.937

gerM

0.642

ywaE

0.574

gerE

0.553

rph

0.543

ysnA

0.520

ysmA

0.520

ysnB

0.518

Your Current Organism:

Bacillus licheniformis

NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gerE	gerM	BL00317	BL00314	Transcriptional regulator.	Spore germination protein GerM.	0.450
gerE	racE	BL00317	BL00315	Transcriptional regulator.	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	0.551
gerE	ysmA	BL00317	BL00319	Transcriptional regulator.	Conserved protein YsmA.	0.525
gerE	ysmB	BL00317	BL00316	Transcriptional regulator.	Probable transcriptional regulator YsmB.	0.553
gerM	gerE	BL00314	BL00317	Spore germination protein GerM.	Transcriptional regulator.	0.450
gerM	racE	BL00314	BL00315	Spore germination protein GerM.	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	0.644
gerM	rph	BL00314	BL00312	Spore germination protein GerM.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.660
gerM	ysmB	BL00314	BL00316	Spore germination protein GerM.	Probable transcriptional regulator YsmB.	0.642
gerM	ysnA	BL00314	BL00311	Spore germination protein GerM.	Conserved protein YsnA; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.	0.637
gerM	ysnB	BL00314	BL05298	Spore germination protein GerM.	Hypothetical protein.	0.678
racE	gerE	BL00315	BL00317	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	Transcriptional regulator.	0.551
racE	gerM	BL00315	BL00314	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	Spore germination protein GerM.	0.644
racE	rph	BL00315	BL00312	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.545
racE	ysmA	BL00315	BL00319	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	Conserved protein YsmA.	0.548
racE	ysmB	BL00315	BL00316	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	Probable transcriptional regulator YsmB.	0.937
racE	ysnA	BL00315	BL00311	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	Conserved protein YsnA; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.	0.957
racE	ysnB	BL00315	BL05298	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	Hypothetical protein.	0.526
rph	gerM	BL00312	BL00314	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Spore germination protein GerM.	0.660
rph	racE	BL00312	BL00315	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	0.545
rph	ysmB	BL00312	BL00316	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Probable transcriptional regulator YsmB.	0.543

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