STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL00318Short-chain dehydrogenase/reductase SDR. (232 aa)    
Predicted Functional Partners:
dhbF
DhbF.
  
 
 0.868
lchAA
Lichenysin synthetase A.
 
 
 0.864
lchAB
Lichenysin synthetase B.
 
 
 0.860
lchAC
Lichenysin synthetase C.
 
 
 0.768
ysmA
Conserved protein YsmA.
  
    0.759
gltA
Glutamate synthase (large subunit).
    
  0.749
ymfI
Putative oxidoreductase.
  
 
  0.700
yusR
Putative Short-chain dehydrogenase/reductase YusR; Similar to 3-oxoacyl- acyl-carrier protein reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.699
bcsA
Naringenin-chalcone synthase.
    
 0.636
BL03573
Beta-ketoacyl-acyl carrier protein reductase.
  
 
  0.607
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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