STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lcfALong chain acyl-CoA synthetase. (559 aa)    
Predicted Functional Partners:
yhfL
AMP-dependent synthetase and ligase.
  
 
0.916
ysiB
Enoyl-CoA hydratase/isomerase YsiB; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.883
dhbF
DhbF.
  
 
 0.875
etfB
Electron transfer flavoprotein (beta subunit).
  
  
 0.824
ysiA
Probable transcriptional regulator YsiA.
 
  
 0.805
lip
Lipase.
     
  0.800
yusL
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YusL.
 
 
 0.794
etfA
Electron transfer flavoprotein (alpha subunit).
  
  
 0.764
lchAA
Lichenysin synthetase A.
  
 
 0.690
ykuF
Short-chain dehydrogenase/reductase YkuF.
    
 
 0.640
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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