STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfALong chain acyl-CoA synthetase. (559 aa)    
Predicted Functional Partners:
dhbF
DhbF.
  
0.989
lchAA
Lichenysin synthetase A.
  
0.986
lchAB
Lichenysin synthetase B.
  
0.922
lchAC
Lichenysin synthetase C.
 
0.902
yusL
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YusL.
 
 0.824
ysiB
Enoyl-CoA hydratase/isomerase YsiB; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.757
rplF
Ribosomal protein L6 (BL8); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.743
ysiA
Probable transcriptional regulator YsiA.
 
  
 0.739
dhbB
Isochorismatase.
  
 
  0.739
etfB
Electron transfer flavoprotein (beta subunit).
  
  
 0.725
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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