STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (493 aa)    
Predicted Functional Partners:
araB
L-ribulokinase.
 
 
 0.998
araD
L-ribulose-5-phosphate 4-epimerase.
 
  
 0.984
abfA
Glycoside Hydrolase Family 51.
 
 
 0.956
yoxA
Conserved hypothetical protein.
  
 
 0.916
araA2
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
0.903
lacA
Glycoside Hydrolase Family 42; Hydrolyzes oligosaccharides released by the endo-1,4-beta- galactosidase GalA from arabinogalactan type I, a pectic plant polysaccharide. It is unable to use lactose as a sole carbon source (By similarity). Catalyzes the hydrolysis of lactose to its constituent monosaccharides glucose and galactose. Possesses a low level of transgalactosylation activity for the production of galacto- oligosaccharides (GOS) from lactose; Belongs to the glycosyl hydrolase 42 family.
     
  0.900
melA
alpha-D-galactoside galactohydrolase, Glycoside Hydrolase Family 4,MelA.
   
 
  0.900
lacA2
Glycoside Hydrolase Family 42; BL01749 similar to lacA from Bacillus subtilis, named by MDT - PiRa.
     
  0.900
yesZ
Glycoside hydrolase, family 42; May play a role in the degradation of rhamnogalacturonan derived from plant cell walls.
     
  0.900
xynB
Glycoside Hydrolase Family 43; Similar to xynB from Bacillus subtilis,xylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.870
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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