STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (493 aa)    
Predicted Functional Partners:
araB
L-ribulokinase.
 
 
 0.994
araD
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.986
BL01183
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.890
abfA
Glycoside Hydrolase Family 51.
 
 
 0.855
BL01184
Sugar kinase, possible xylulose kinase.
 
 
 0.788
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
  
   
 0.685
araM
AraM; Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is probably used for the synthesis of phosphoglycerolipids in Gram-positive bacterial species. Belongs to the glycerol-1-phosphate dehydrogenase family.
  
  
 0.679
araN
Sugar-binding protein.
 
    0.660
abnA
Glycoside Hydrolase Family 43; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.641
blaI
Putative beta-lactamase repressor protein.
      
 0.613
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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