STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yubDPutative transporter YubD. (540 aa)    
Predicted Functional Partners:
yhbJ
Conserved protein YhbJ.
 
   0.930
yhbJ-2
Putative transporter YhbJ.
 
   0.779
ycnB
Drug resistance transporter YcnB; Similar to drug antiporter EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
  
     0.767
BL00737
Putative drug antiporter(transporter); Belongs to the major facilitator superfamily.
  
     0.766
ywoD
Major facilitator superfamily protein YwoD.
  
     0.763
yvmA
Putative transporter YvmA.
  
    0.558
yxaD
Probable transcriptional regulator YxaD.
       0.534
ytcI
AMP-dependent synthetase and ligase YtcI.
       0.447
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.