STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yesEConserved protein YesE. (139 aa)    
Predicted Functional Partners:
yesF
Conserved protein YesF.
 
    0.922
yezE
Probable transcriptional regulator (TetR family).
 
     0.729
yoaJ
YoaJ.
  
     0.707
yhjG
Putative Flavoprotein monooxygenase.
  
    0.687
bglC
Endo-1,4-beta-glucanase, Glycoside hydrolase Family 5.
  
     0.663
yvmC
Conserved hypothetical protein YvmC; Involved in the biosynthesis of pulcherrimin, a red extracellular pigment. It uses activated amino acids in the form of aminoacyl-tRNAs (aa-tRNAs) as substrates to catalyze the ATP- independent formation of cyclodipeptides which are intermediates in diketopiperazine (DKP) biosynthetic pathways. Catalyzes the formation of cyclo(L-Leu-L-Leu) (cLL) from L-leucyl-tRNA(Leu). Can also incorporate various nonpolar residues, such as L-phenylalanine, L- leucine and methionine, into cyclodipeptides.
  
     0.643
yjiC
Glycosyl transferase Family 1.
  
    0.613
dhbF
DhbF.
 
    0.600
pelB
Pectate lyase, Polysaccharide Lyase Family 1.
  
     0.593
lchAB
Lichenysin synthetase B.
 
    0.582
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.