STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yraDYraD. (99 aa)    
Predicted Functional Partners:
yraE
YraE.
 
  
 0.983
ycbP
Hypothetical protein.
  
     0.704
ydhD
Glycoside hydrolase, family 18.
     
 0.653
BL01876
Hypothetical protein.
  
    0.604
gsiB
General stress protein.
  
     0.595
adhB
Alcohol dehydrogenase.
 
    0.594
ythB
Conserved hypothetical protein YthB.
  
     0.587
sspH
Small acid-soluble spore protein; Belongs to the SspH family.
  
   
 0.574
yhcQ
Conserved hypothetical protein YhcQ.
   
  
 0.554
yhbB
Conserved hypothetical protein yhbB.
  
   
 0.497
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.