STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydhDGlycoside hydrolase, family 18. (419 aa)    
Predicted Functional Partners:
yacB
Conserved hypothetical protein YacB; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.
      
 0.671
yraD
YraD.
     
 0.653
yjeA
Putative Carbohydrate Esterase Family 4 protein; Similar to endo-1,4-beta-xylanase.
 
      0.638
yhbB
Conserved hypothetical protein yhbB.
  
  
 0.591
gerKA
GerKA.
  
     0.548
yraE
YraE.
       0.525
yezE
Probable transcriptional regulator (TetR family).
       0.505
xkdP
Hypothetical phage related protein.
 
     0.496
gerKC
GerKC.
  
     0.490
gerKB
GerKC.
  
     0.482
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.