STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL00460Hydantoin Utilization protein B. (579 aa)    
Predicted Functional Partners:
BL00462
Hydantoin utilization protein A.
 0.998
BL01720
Hydantoin utilization protein A.
 0.995
BL00461
N-methylhydantoinase B.
 
    
0.827
BL00463
Permease for cytosine/purines, uracil, thiamine, allantoin.
       0.700
BL00465
Possible transcriptional regulator.
       0.588
BL05182
Hypothetical protein.
       0.588
BL01390
Hypothetical protein.
  
  
  0.479
BL00459
Hypothetical protein.
       0.459
ywrD
Peptidase T3, gamma-glutamyltranspeptidase.
  
  
  0.400
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.