STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adaBO6-methylguanine-DNA methyltransferase. (175 aa)    
Predicted Functional Partners:
adaA
methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family).
  
 0.996
yhbA
4Fe-4S cluster binding putative ferredoxin; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
     0.608
yfjP
Putative DNA glycosylase; Similar to DNA-3-methyladenine glycosidase II.
 
 
 0.549
ndhF
NADH dehydrogenase (subunit 5).
      
 0.487
sigA
RNA polymerase major sigma-43 factor (sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
   0.484
cat
Antibiotic resistance protein, methyltransferase; This enzyme is an effector of chloramphenicol resistance in bacteria; Belongs to the chloramphenicol acetyltransferase family.
       0.482
dinG
ATP-dependent helicase; 3'-5' exonuclease.
     
 0.445
yxiE
Conserved protein containing universal stress protein domain YxiE.
   
    0.420
nhaX
Stress response protein, NhaX.
   
    0.420
recJ
RecJ exonuclease.
     
 0.411
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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