STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yeaAConserved protein YeaA. (330 aa)    
Predicted Functional Partners:
BL01443
Hypothetical protein.
      
 0.605
yvlB
Conserved hypothetical protein YvlB.
  
  
 0.588
yfhJ
Conserved protein YfhJ.
  
     0.555
ysdB
Conserved protein YsdB.
  
    0.551
yvlA
YvlA.
   
  
 0.543
BL00479
Small nuclear-like ribonucleoprotein.
       0.538
yhaK
Hypothetical protein.
  
     0.491
ypjP
Conserved hypothetical protein YpjP.
  
     0.453
splA
Transcriptional regulator.
  
     0.444
yycE
YycE.
  
    0.438
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.