STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvdJConserved membrane protein YvdJ. (293 aa)    
Predicted Functional Partners:
mdxF
Maltodextrin transport system permease protein MdxF.
 
  
 0.988
mdxG
MdxG - part of ABC transport system for maltodextrins, membrane spanning component.
 
  
 0.979
mdxE
MdxE is substrate binding part of the maltodextrin ABC transport system.
 
  
 0.976
pgcM
Beta-phosphoglucomutase and glucose-1-phosphate phosphodismutase.
  
  
 0.969
yvdK
Glycoside Hydrolase Family 65, YvdK; Maltose phosphorylase.
 
  
 0.946
malL
Glycoside Hydrolase Family 13, MalL; Similar to oligo-1,4-1,6-alpha-glucosidase (sucrase-maltase-isomaltase).
  
  
 0.920
yvdF
Glycoside Hydrolase Family 13 YvdF; Putative neopullulanase.
 
    0.910
cycB
Putative extracellular solute-binding protein, family 1 CycB.
 
  
 0.825
yvfM
Binding-protein-dependent transport system, inner membrane component protein.
 
  
 0.815
yknT
sigma-E controlled sporulation protein.
  
     0.736
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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