STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvdFGlycoside Hydrolase Family 13 YvdF; Putative neopullulanase. (586 aa)    
Predicted Functional Partners:
yvdK
Glycoside Hydrolase Family 65, YvdK; Maltose phosphorylase.
 
 
 0.956
mdxE
MdxE is substrate binding part of the maltodextrin ABC transport system.
 
  
 0.928
pgcM
Beta-phosphoglucomutase and glucose-1-phosphate phosphodismutase.
 
 
 0.918
yvdJ
Conserved membrane protein YvdJ.
 
    0.893
bglP
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
  
 
 0.891
BL01947
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
  
 
 0.891
BL02334
Phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.
  
 
 0.891
ptsG
Phosphotransferase system (PTS) glucose-specific enzyme IICBA component.
  
 
 0.891
mdxF
Maltodextrin transport system permease protein MdxF.
 
  
 0.885
amyX
Putative pullulanase, Glycoside Hydrolase Family 13, AmyX; Belongs to the glycosyl hydrolase 13 family.
 
0.868
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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