STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjeAPutative Carbohydrate Esterase Family 4 protein; Similar to endo-1,4-beta-xylanase. (459 aa)    
Predicted Functional Partners:
ydaM
Glycosyl transferase, family 2.
 
 
 0.783
chi
Conserved protein, Glycoside Hydrolase Family 18; Chitnase; Belongs to the glycosyl hydrolase 18 family.
    
 0.767
ydhD
Glycoside hydrolase, family 18.
 
      0.638
BL00500
Conserved hypothetical protein; Similar to endo-1,4-beta-xylanase.
       0.568
BL07003
Hypothetical protein; BLi00653, RBL05904.
       0.568
BL02962
Putative Glycosyl transferase, family 2.
  
 
 0.549
amyL
Alpha amylase, Glycoside Hydrolase Family 13; BL00499 similar to treA from Bacillus subtilis.
       0.494
BL05058
Hypothetical protein.
 
     0.423
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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