STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yabMPutative Polysaccharide biosynthesis protein YabM; Possible polysaccharide transporter, similar to spoVB. (530 aa)    
Predicted Functional Partners:
yabO
Putative RNA-binding S4 protein YabO.
  
    0.874
yabN
Putative phosphatase and methylase similar to MazG.
  
    0.858
yabP
Conserved hypothetical protein YabP.
  
  
 0.742
divIC
Cell-division initiation protein.
 
     0.728
yabQ
Essential protein for formation of the spore cortex YabQ.
     
 0.714
yabR
Putative Nucleic acid-binding OB-fold protein,contains S1 domain.
 
     0.677
yacP
Conserved hypothetical protein YacP.
  
     0.650
spoVT
Transcriptional regulator.
     
 0.631
swrB
Motility/swarming protein SwrB.
  
     0.561
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.546
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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