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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yabEConserved hypothetical containing domain DUF348 YabE; MineBlast: resuscitation promoting factor. (441 aa)    
Predicted Functional Partners:
xkdP
Hypothetical phage related protein.
  
  
 0.813
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.789
yrvJ
N-acetylmuramoyl-L-alanine amidase YrvJ.
  
 
  0.763
cwlO
Putative peptidoglycan hydrolase, DL-endopeptidase II family; Shows a cell wall hydrolytic DL-endopeptidase activity. Belongs to the peptidase C40 family.
  
 0.743
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
 
   
 0.739
yabD
Putative TatD-related deoxyribonuclease YabD.
     
 0.728
ylxW
Conserved hypothetical protein.
 
     0.663
ylxX
Hypothetical protein.
 
     0.639
sbp
Small basic protein.
  
     0.638
BL03388
Conserved hypothetical protein.
  
 0.566
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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