STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytcIAMP-dependent synthetase and ligase YtcI. (529 aa)    
Predicted Functional Partners:
mmgD
Citrate synthase III; Belongs to the citrate synthase family.
  
 0.952
BL02644
Malate synthase A; Belongs to the malate synthase family.
   
 0.936
citZ
Citrate synthase II; Belongs to the citrate synthase family.
  
 0.935
citA
Citrate synthase I; Belongs to the citrate synthase family.
  
 0.927
pta
Phosphotransacetylase.
     
 0.927
BL01993
acetyl-CoA synthetase.
  
 
 
0.924
mmgA
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.923
BL00199
Alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.922
acsA
acetyl-CoA synthetase.
  
 
 
0.918
yngH
Carbamoyl-phosphate synthase L chain, ATP binding.
  
 0.916
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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