STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL00567Carbohydrate Esterase Family 12, putative beta-tubulin. (219 aa)    
Predicted Functional Partners:
BL00713
Glycoside Hydrolase Family 28; Belongs to the glycosyl hydrolase 28 family.
  0.946
BL00724
Carbohydrate Esterase Family 8 protein.
  
 0.935
yesX
Polysaccharide lyase Family 11.
 
  0.882
yesW
Putative polysaccharide lyase family 11 protein.
 
  0.882
yetA
Conserved hypothetical protein; Molecular Function: carboxypeptidase A activity, Biological Process: proteolysis and peptidolysis.
 
  0.859
yteR
Unsaturated rhamnogalacturonyl hydrolase.
 
  
  0.804
yesR
Conserved protein YesR.
 
  
  0.804
yvpA
Polysaccharide Lyase Family 3; Catalyzes the depolymerization of both polygalacturonate and pectins of methyl esterification degree from 22 to 89%, with an endo mode of action. In contrast to the majority of pectate lyases, displays high activity on highly methylated pectins (By similarity). Belongs to the polysaccharide lyase 3 family.
  
  0.797
BL03022
Glycoside Hydrolase Family 43; Similar to xynB from Bacillus subtilis; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.778
BL00947
Pectate lyase, Polysaccharide Lyase Family 1; Cleaves unsaturated oligo-galacturonides from pectin. The major product is trigalacturonate; digalacturonate and tetragalacturonate are also produced. Activity on methylated pectins decreases with an increasing degree of methylation (By similarity). Belongs to the polysaccharide lyase 1 family.
  
  
  0.746
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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