STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yolDPutative phage related protein. (109 aa)    
Predicted Functional Partners:
yhjD
Conserved hypothetical protein YhjD.
 
    0.767
yqgU
Conserved protein YqgU.
  
     0.683
uvrX
UV-damage repair protein UvrX; Belongs to the DNA polymerase type-Y family.
 
     0.664
yneE
Conserved hypothetical protein YneE.
  
     0.664
ysdB
Conserved protein YsdB.
  
     0.591
yttB
Major facilitator superfamily YttB.
  
     0.588
BL00545
Hypothetical protein.
       0.566
sigY
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-Y); Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.560
BL00575
Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core; Belongs to the 'phage' integrase family.
       0.553
spoVIF
SpoVIF.
  
     0.534
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.