Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ysxDYsxD. (161 aa)    
Predicted Functional Partners:
yqfQ
Tubulin YqfQ.
  
     0.710
BL02399
Hypothetical protein.
  
     0.674
yhaH
Conserved hypothetical protein YhaH.
  
     0.662
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
       0.661
hemX
Membrane-bound protein.
       0.661
yjbA
Conserved protein YjbA; Belongs to the UPF0736 family.
  
     0.661
yviE
Conserved protein YviE.
  
     0.637
yhdB
Conserved hypothetical protein YhdB.
  
     0.625
tasA
Translocation-dependent antimicrobial spore component.
  
     0.623
yodI
Hypothetical protein.
  
     0.616
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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