STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rsiXRsiX. (368 aa)    
Predicted Functional Partners:
sigX
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-X); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.991
yhjD
Conserved hypothetical protein YhjD.
  
     0.723
ysoA
Conserved protein YsoA.
  
 
   0.706
ytrI
Conserved protein YtrI.
  
     0.677
yqzC
Conserved protein YqzC.
  
     0.677
yocH
Putative peptidogycan hydrolase YocH.
   
 
 0.676
yqgU
Conserved protein YqgU.
  
     0.673
ytzE
Probable transcriptional regulator YtzE.
  
     0.659
ykvU
Polysaccharide biosynthesis protein.
  
     0.637
ywmB
Conserved protein YwmB.
  
   
 0.633
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.