STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvsHPutative amino acid transporter YvsH. (467 aa)    
Predicted Functional Partners:
arcA
Arginine deiminase.
 
  
 0.690
malL
Glycoside Hydrolase Family 13, MalL; Similar to oligo-1,4-1,6-alpha-glucosidase (sucrase-maltase-isomaltase).
   
  0.546
yvdF
Glycoside Hydrolase Family 13 YvdF; Putative neopullulanase.
   
  0.546
amyL
Alpha amylase, Glycoside Hydrolase Family 13; BL00499 similar to treA from Bacillus subtilis.
   
  0.546
yugT
Glycoside Hydrolase Family 13, YugT.
   
  0.546
treA
Glycoside Hydrolase Family 13.
   
  0.546
fhuB
Ferrichrome ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.473
fhuG
Ferrichrome ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.473
fhuC
Ferrichrome ABC transporter (ATP-binding protein).
  
    0.449
BL07058
Hypothetical protein; BLi03523.
       0.448
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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