STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrgAMetalloregulation DNA-binding stress protein; Belongs to the Dps family. (154 aa)    
Predicted Functional Partners:
ahpC
Alkyl hydroperoxide reductase (small subunit); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.718
yvyD
YvyD; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
    0.606
ykuU
Alkyl hydroperoxide reductase.
  
  
 0.606
perR
Transcriptional regulator (Fur family); Belongs to the Fur family.
  
  
 0.598
katA
Vegetative catalase 1; Belongs to the catalase family.
  
  
 0.586
yusZ
Short-chain dehydrogenase/reductase YusZ; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.560
ahpF
Alkyl hydroperoxide reductase (large subunit) and NADH dehydrogenase.
  
  
 0.559
prkA
Serine protein kinase.
   
    0.559
BL02638
Trp repressor binding protein, putative; Belongs to the WrbA family.
  
  
 0.540
yhcB
Putative Flavodoxin/nitric oxide synthase YhcB.
  
  
 0.540
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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