STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqjTConserved protein YqjT. (127 aa)    
Predicted Functional Partners:
coaA
Pantothenate kinase.
  
    0.776
yqjP
Conserved protein YqjP.
   
 
 0.723
BL01340
N-acetyltransferase.
     0.716
yqjQ
Short-chain dehydrogenase/reductase YqjQ; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.700
birA
Transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.439
sdhC
Succinate dehydrogenase (cytochrome b558 subunit).
   
    0.421
BL01994
DNA binding domain, excisionase family protein.
  
    0.408
BL00804
Hypothetical protein.
       0.407
BL00805
ABC transporter,ATP/GTP-binding site motif A (P-loop).
       0.407
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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