Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
oxdCOxalate decarboxylase. (384 aa)    
Predicted Functional Partners:
yrhE
Formate dehydrogenase, alpha subunit YrhE.
     
 0.912
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
  0.900
yjgC
Iron-sulfur binding domain containing protein.
     
  0.900
yvrL
Putative endo-peptidase YvrL.
  
  
 0.898
malS
Malate dehydrogenase (decarboxylating).
     
 0.811
ytsJ
Malate dehydrogenase isozyme YtsJ.
     
 0.811
mleA
Malolactic enzyme.
     
 0.811
maeA
Malate dehyrogenase isozyme.
     
 0.811
BL02644
Malate synthase A; Belongs to the malate synthase family.
     
 0.810
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
    
  0.800
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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