STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybcFCarbonic anhydrase YbcF. (168 aa)    
Predicted Functional Partners:
BL00917
Conserved hypothetical protein; Belongs to the UPF0753 family.
  
    0.984
BL01783
Putative carbonic anhyrdase.
    
 0.946
yvdA
Carbonic anhydrase, prokaryotic YvdA.
  
  
 
0.925
ytiB
Putative Carbonic anhydrase.
  
  
 
0.924
ndhF
NADH dehydrogenase (subunit 5).
  
  
 0.911
ybcI
Conserved protein YbcI.
  
    0.851
ywcJ
Formate/nitrite transporter.
  
    0.585
yrhG
Putative formate-nitrite transporter.
  
    0.585
yrhF
Conserved protein YrhF.
 
    0.496
ytoA
Conserved protein YtoA.
    
 
 0.482
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.