STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydACytochrome bd ubiquinol oxidase (subunit I). (468 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd ubiquinol oxidase (subunit II).
 0.999
cydC
ABC membrane transporter (ATP-binding protein).
 
  
 0.994
cydD
ABC membrane transporter (ATP-binding protein).
 
  
 0.991
ythB
Conserved hypothetical protein YthB.
  
 
 0.943
ythA
Cytochrome bd ubiquinol oxidase, subunit I.
  
  
 
0.766
lctP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
   
  
 0.690
sdhA
Succinate dehydrogenase (flavoprotein subunit).
     
 0.687
yumB
FAD-dependent pyridine nucleotide-disulphide oxidoreductase YumB.
 
   
 0.633
nasD
Assimilatory nitrite reductase (subunit); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
  
 0.620
nasF
uroporphyrin-III C-methyltransferase.
     
 0.614
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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