STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cydCABC membrane transporter (ATP-binding protein). (574 aa)    
Predicted Functional Partners:
cydD
ABC membrane transporter (ATP-binding protein).
 
0.999
cydB
Cytochrome bd ubiquinol oxidase (subunit II).
 
  
 0.998
cydA
Cytochrome bd ubiquinol oxidase (subunit I).
 
  
 0.992
ythA
Cytochrome bd ubiquinol oxidase, subunit I.
 
  
 0.907
ythB
Conserved hypothetical protein YthB.
  
  
 0.852
artM
ABC transporter.
 
     
0.659
yumB
FAD-dependent pyridine nucleotide-disulphide oxidoreductase YumB.
 
     0.619
cbiO1
ABC transporter; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
     
0.604
yjlD
Aminotransferase, class IV YjlD.
 
     0.494
menH
Methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
 
   
 0.490
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.