STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlCYxlC. (107 aa)    
Predicted Functional Partners:
sigY
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-Y); Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.969
yxlE
YxlE.
  
  
 0.952
yxlD
YxlD.
  
  
 0.933
yxlF
ABC transporter.
  
    0.893
yxlG
YxlG.
  
    0.848
yxlH
Putative electron transport protein YxlH.
     
 0.599
ylaC
ECF sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.549
BL00944
Drug resistance transporter.
       0.506
sigV
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V); Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.445
sigM
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-M); Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.444
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.