STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlGYxlG. (258 aa)    
Predicted Functional Partners:
yxlF
ABC transporter.
 
  0.979
yxlE
YxlE.
 
    0.977
yxlD
YxlD.
  
    0.897
sigY
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-Y); Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.891
yxlC
YxlC.
  
    0.848
yfiL
ABC transporter YfiL.
 
  0.616
yvfR
ABC transporter.
 
  0.599
yxlH
Putative electron transport protein YxlH.
     
 0.599
yhcH
ABC transporter YhcH.
 
  0.598
ycbN
ABC transporter YcbN.
 
  0.591
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.