STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywcJFormate/nitrite transporter. (262 aa)    
Predicted Functional Partners:
ybcF
Carbonic anhydrase YbcF.
  
    0.623
yvdA
Carbonic anhydrase, prokaryotic YvdA.
  
    0.623
ytiB
Putative Carbonic anhydrase.
  
    0.623
nasE
Assimilatory nitrite reductase (subunit).
 
  
 0.508
BL00945
Hypothetical protein.
       0.484
yjzC
Conserved hypothetical protein YjzC.
  
     0.462
nasF
uroporphyrin-III C-methyltransferase.
 
  
 0.428
gltA
Glutamate synthase (large subunit).
   
  
 0.428
BL00199
Alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.413
rghR
Posible transcriptional regulator.
  
   
 0.411
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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