STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ywcJFormate/nitrite transporter. (262 aa)    
Predicted Functional Partners:
hmp
Flavohemoglobin; Belongs to the globin family.
  
  
 0.628
BL02042
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
      
 0.597
ybcF
Carbonic anhydrase YbcF.
  
    0.585
yvdA
Carbonic anhydrase, prokaryotic YvdA.
  
    0.585
ytiB
Putative Carbonic anhydrase.
  
    0.585
BL00945
Hypothetical protein.
       0.493
narG
Nitrate reductase (alpha subunit); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.490
yjzC
Conserved hypothetical protein YjzC.
  
     0.462
yhdE
Conserved hypothetical protein YhdE; Nitric oxide-responsive transcriptional regulator.
      
 0.425
BL01863
Putative formate C-acetyltransferase.
 
  
 0.404
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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