Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BL00962 | yfmO | BL00962 | BL00959 | Cation transporter. | Putative multidrug efflux protein. | 0.409 |
| BL00962 | ymfP | BL00962 | BL00958 | Cation transporter. | Putative DNA binding protein YmfP. | 0.516 |
| BL03174 | cueR | BL03174 | BL02846 | Two-component sensor histidine kinase. | Transcriptional activator of copZA operon (MerR family). | 0.530 |
| BL03174 | mtaC | BL03174 | BL01702 | Two-component sensor histidine kinase. | Transcriptional regulator; Similar to mta from Bacillus subtilis,MerR family. | 0.530 |
| BL03174 | mtaD | BL03174 | BL01754 | Two-component sensor histidine kinase. | Transcriptional regulator (MerR family); BL01754 similar to mta from Bacillus subtilis. | 0.530 |
| BL03174 | ymfP | BL03174 | BL00958 | Two-component sensor histidine kinase. | Putative DNA binding protein YmfP. | 0.530 |
| cueR | BL03174 | BL02846 | BL03174 | Transcriptional activator of copZA operon (MerR family). | Two-component sensor histidine kinase. | 0.530 |
| cueR | dnaJ | BL02846 | BL02098 | Transcriptional activator of copZA operon (MerR family). | Heat-shock protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] | 0.567 |
| cueR | gcvT | BL02846 | BL01562 | Transcriptional activator of copZA operon (MerR family). | Aminomethyltransferase (glycine cleavage system protein T); The glycine cleavage system catalyzes the degradation of glycine. | 0.529 |
| cueR | mtaD | BL02846 | BL01754 | Transcriptional activator of copZA operon (MerR family). | Transcriptional regulator (MerR family); BL01754 similar to mta from Bacillus subtilis. | 0.423 |
| cueR | rtpA | BL02846 | BL05022 | Transcriptional activator of copZA operon (MerR family). | Inhibitor of TRAP, regulated by T-BOX (trp) sequence RtpA. | 0.567 |
| cueR | sigA | BL02846 | BL03682 | Transcriptional activator of copZA operon (MerR family). | RNA polymerase major sigma-43 factor (sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.513 |
| cueR | ymfP | BL02846 | BL00958 | Transcriptional activator of copZA operon (MerR family). | Putative DNA binding protein YmfP. | 0.627 |
| dnaJ | cueR | BL02098 | BL02846 | Heat-shock protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] | Transcriptional activator of copZA operon (MerR family). | 0.567 |
| dnaJ | mtaC | BL02098 | BL01702 | Heat-shock protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] | Transcriptional regulator; Similar to mta from Bacillus subtilis,MerR family. | 0.567 |
| dnaJ | mtaD | BL02098 | BL01754 | Heat-shock protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] | Transcriptional regulator (MerR family); BL01754 similar to mta from Bacillus subtilis. | 0.567 |
| dnaJ | sigA | BL02098 | BL03682 | Heat-shock protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] | RNA polymerase major sigma-43 factor (sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.561 |
| dnaJ | ymfP | BL02098 | BL00958 | Heat-shock protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] | Putative DNA binding protein YmfP. | 0.567 |
| gcvT | cueR | BL01562 | BL02846 | Aminomethyltransferase (glycine cleavage system protein T); The glycine cleavage system catalyzes the degradation of glycine. | Transcriptional activator of copZA operon (MerR family). | 0.529 |
| gcvT | ymfP | BL01562 | BL00958 | Aminomethyltransferase (glycine cleavage system protein T); The glycine cleavage system catalyzes the degradation of glycine. | Putative DNA binding protein YmfP. | 0.529 |
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