STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqaSPutative DNA binding protein. (235 aa)    
Predicted Functional Partners:
BL00983
Phage related protein.
 
     0.926
yqaT
Phage terminase, large subunit.
 
    0.904
BL00982
Phage related minor head protein.
 
     0.869
xkdE
Phage related protein.
  
    0.733
BL05294
Hypothetical phage-like protein.
  
    0.733
spoIVCA
Site-specific DNA recombinase.
  
    0.701
yneB
Resolvase, N-terminal domain - putative recombinase YneB.
   
    0.632
xtmB
Putative phage terminase (large subunit).
 
    0.604
yqaQ
Bipartite response regulator, C-terminal effector.
 
    0.599
BL00759
Phage terminase, large subunit protein.
 
    0.589
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.