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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerDGerD. (193 aa)    
Predicted Functional Partners:
cotE
Morphogenic protein.
  
     0.774
rsfA
Putative transcriptional regulatory protein.
  
     0.774
ylbO
DNA-binding domain protein.
  
     0.774
ydcC
Conserved membrane protein YdcC.
  
     0.773
yqhG
Conserved protein YqhG.
  
     0.771
lytH
Putative metallopeptidase.
  
     0.768
gerQ
GerQ; Essential for the localization of CwlJ in the spore coat and for spore germination triggered by calcium and dipicolinic acid (DPA). Its assembly into the spore coat is dependent on the coat morphogenetic proteins CotE and SpoIVA.
  
     0.764
yhbB
Conserved hypothetical protein yhbB.
  
     0.756
sspI
Small acid-soluble spore protein; Belongs to the SspI family.
  
     0.755
safA
Morphogenetic protein associated with SpoVID.
  
     0.739
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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