STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwlDN-acetylmuramoyl-L-alanine amidase. (237 aa)    
Predicted Functional Partners:
ydcC
Conserved membrane protein YdcC.
  
 
   0.837
lytB
Modifier protein of major autolysin LytC (CWBP76).
 
 0.826
cwlC
N-acetylmuramoyl-L-alanine amidase.
  
 
0.770
spoIID
SpoIID.
 
 0.673
yrvJ
N-acetylmuramoyl-L-alanine amidase YrvJ.
 
  
 
0.669
ytkC
Conserved membrane protein YtkC.
  
    0.647
BL00871
Phage related protein.
   
 
  0.645
BL02879
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.631
spoVAC
SpoVAC.
  
   
 0.615
BL01514
Cell wall hydrolase/autolysin.
  
  
 
0.611
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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