STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhfAConserved hypothetical protein YhfA. (457 aa)    
Predicted Functional Partners:
yhgC
Conserved hypothetical protein YhgC.
     
 0.647
yhaA
Putative amidohydrolase YhaA.
     
 0.604
gerPE
Spore germination protein.
  
    0.580
gerPB
Spore germination protein.
  
    0.555
yhbF
Conserved hypothetical protein.
  
     0.509
yhbE
Hypothetical cytosolic protein.
  
     0.508
gerPD
Spore germination protein.
  
    0.456
ytlA
Putative sulfonate transport system substrate-binding protein YtlA.
  
    0.417
gerPC
Spore germination protein.
  
     0.414
ytlD
Putative sulfonate transport system permease protein YtlD.
  
    0.411
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.