STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhfWPutative oxidoreductase YhfW. (509 aa)    
Predicted Functional Partners:
ctaC
Cytochrome caa3 oxidase (subunit II); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 0.997
sdhA
Succinate dehydrogenase (flavoprotein subunit).
  
 
 0.953
sdhB
Succinate dehydrogenase (iron-sulfur protein).
  
 
 0.936
ctaE
Cytochrome caa3 oxidase (subunit III).
  
 
 0.930
qoxC
Cytochrome aa3 quinol oxidase (subunit III).
  
 
 0.930
qcrB
Menaquinol:cytochrome c oxidoreductase (cytochrome b subunit).
  
 0.929
BL03212
Conservd hypothetical protein.
  
 0.929
cccB
Cytochrome c551.
  
 
 0.929
cccA
Cytochrome c550.
  
 
 0.929
qcrC
Menaquinol:cytochrome c oxidoreductase (cytochrome b/c subunit); Component of the menaquinol-cytochrome c reductase complex.
  
 0.929
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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