STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrvJN-acetylmuramoyl-L-alanine amidase YrvJ. (523 aa)    
Predicted Functional Partners:
ctpB
Peptidase S41A, C-terminal protease; Belongs to the peptidase S41A family.
  
  
 0.693
cwlS
gamma-D-glutamate-meso-diaminopimelate muropeptidase (major autolysin) (CWBP49').
 
  
 0.562
cinA
Competence-damage inducible protein; Belongs to the CinA family.
 
     0.562
cwlC
N-acetylmuramoyl-L-alanine amidase.
 
 
0.559
lytE
Cell wall hydrolase phosphatase-associated protein.
 
  
 0.531
yrzK
YrzK.
       0.527
lytB
Modifier protein of major autolysin LytC (CWBP76).
  
 0.514
birA
Transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.503
cwlO
Putative peptidoglycan hydrolase, DL-endopeptidase II family; Shows a cell wall hydrolytic DL-endopeptidase activity. Belongs to the peptidase C40 family.
  
  
 0.495
ypmS
Conserved protein YpmS.
  
     0.492
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.