STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BL01178Transcriptional regulator (LacI family). (363 aa)    
Predicted Functional Partners:
BL01184
Sugar kinase, possible xylulose kinase.
 
 
   0.821
gltA
Glutamate synthase (large subunit).
    
 
 0.782
dhbF
DhbF.
    
 
 0.745
lacR
Transcriptional regulator LacR.
  
     0.710
msmR
Transcriptional regulator MsmR.
  
     0.704
araA2
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.660
lchAC
Lichenysin synthetase C.
    
   0.633
BL01183
L-ribulose-5-phosphate 4-epimerase.
 
   
 0.549
xylB
Xylulose kinase.
  
 
 
 0.536
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.485
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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